#!/bin/bash
mkdir 102-Octyl-alcohol17Na
mkdir 132-Octyl-alcohol34Na
mkdir 152-Octyl-alcohol52Na
mv 102-Octyl-alcohol17Na.* 102-Octyl-alcohol17Na
mv 132-Octyl-alcohol34Na.* 132-Octyl-alcohol34Na
mv 152-Octyl-alcohol52Na.* 152-Octyl-alcohol52Na
cp lt_template/*.* 102-Octyl-alcohol17Na
cp lt_template/*.* 132-Octyl-alcohol34Na
cp lt_template/*.* 152-Octyl-alcohol52Na
cd 102-Octyl-alcohol17Na
moltemplate.sh -pdb 102-Octyl-alcohol17Na.pdb 102-Octyl-alcohol17Na.lt 
rm -rf output_ttree
cd ..
cd 132-Octyl-alcohol34Na
moltemplate.sh -pdb 132-Octyl-alcohol34Na.pdb 132-Octyl-alcohol34Na.lt
rm -rf output_ttree
cd ..
cd 152-Octyl-alcohol52Na
moltemplate.sh -pdb 152-Octyl-alcohol52Na.pdb 152-Octyl-alcohol52Na.lt
rm -rf output_ttree
cd ..

